PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127273.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 959aa    MW: 106967 Da    PI: 6.8119
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.29.9e-09147229272
        trihelix   2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     W+ +e l+L +a r   ++ r+g+             ++ + +ev++++ ++g++r +k    kw+n+ ++++k++e+ek+  
  XP_009127273.1 147 WKPNEMLCLARAWRVQYQNQRTGSgsgsgsgegrgkTRAEKDREVAEYLNRKGVNRDSKVAGTKWDNMLGEFRKVNEWEKGAD 229
                     77777888877777555555544333444444444499999**************************************9863 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-7145230No hitNo description
CDDcd001801.53E-9807948No hitNo description
SuperFamilySSF561124.01E-13807947IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.106.8E-5809911No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MGETTKGDAT KPSPNQISPP KDSSLDHQTP NPSVLHHLHQ SFLSSPIFIP TVSSPGAPVI  60
PKRPRFSSSG GLSPPQWRAL PSPSTVPTAS TISSLPFPST AVIAASSTET AGSSPLVQEA  120
TNTEKQQPET ESFQHKFRKG KYVSPVWKPN EMLCLARAWR VQYQNQRTGS GSGSGSGEGR  180
GKTRAEKDRE VAEYLNRKGV NRDSKVAGTK WDNMLGEFRK VNEWEKGADR ERFGKSYFRL  240
SPYERKQHQL PASFDEEVYN ELALFIGPRV RAPTISRSVS GGATADVTLT PPSAETLPPP  300
LHPPVMTSRD DDINNNPITS IGRGKRLALS IVGDDHPQYP YSSNIARGSG LFSNRSLYYN  360
PSCERIPSSS SSSSSLKDLR RVGKIRLTWE ESVNLWAEEG EVDYGRIRVC GSSFLNADEL  420
TYLDDSMVAS TMESFEDGPL KGFSLDKFIS GQHLKVFGRQ KSTSSSAPPL SVNMAFDRAQ  480
LPLSEHIHKS ISTLEFQDPS EHCLSKLRVP AGNLPSITEL ARYLQEPPPE DLRFPLRLDV  540
YNDLPLGKEL FFFTSSTELL DCRAITYDIL GPIMSPLNKG FVIFSKDSLI PLWDDCVNRM  600
VSKFCEMVVL RKPDSSSCVE NVQDQWPNVM GFVKGFGLWR GEEVDKVREG APDPSSLLVE  660
KILWSYNDLP YILGYYAIGL TVTFCSLSRS SYDRVTCTDL YSFDVSSPSD RIKALVPCYR  720
LASLLPLLAD QCTAGRLCYN DFERIIHGDF LTEMTPHTVT KYYSSKTKWN VAKGIYDFLD  780
QRVPHAEYLD KASEKDLSLS FKPRGIRVKP LNVDQLIESL MCVTRALVAL HDISFMHRNM  840
GWENVMKSET TSTSNAEWFV CGFEEAAESP QLNPHRPAAQ EEEEERGRHA PEMERGLHAV  900
KVDVWGVGYM IKTCGVSNVP KMLRELQGKC LEPNQENRPT AADCFHHLLQ VQPAVPSSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127273.10.0PREDICTED: uncharacterized protein LOC103852127
TrEMBLM4E1B50.0M4E1B5_BRARP; Uncharacterized protein
STRINGBra022563.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83561624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-09Trihelix family protein